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Broad Institute Inc github repository
Github Repository, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/github+repository/github+repository/pm40597352-628-2-0
Average 90 stars, based on 1 article reviews
github repository - by Bioz Stars, 2026-11
90/100 stars

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Related Articles

other:

Article Title: Loop Catalog: a comprehensive HiChIP database of human and mouse samples.
Article Snippet: Broad Institute, GitHub repository: Broad Institute; 2019.

Article Title: Proliferation and regeneration of the healthy human urothelium: A multi-scale simulation approach with 16 hypotheses of cell differentiation
Article Snippet: The source code and data used to produce the results and analyses presented in this manuscript are available in on a GitHub repository at https://github.com/informatik-mannheim/Moduro-CC3D and https://github.com/informatik-mannheim/Moduro-Toolbox .

Article Title: The combination of zalfermin and semaglutide has additive therapeutic effects in a diet-induced obese and biopsy-confirmed mouse model of MASH
Article Snippet: The code used to generate the results is available in the GitHub repository ( https://github.com/novonordisk-research/Zalfermin_liver_RNAseq ).

Article Title: A systematic scoring system to optimise the testing of neurotherapeutics in models of perinatal brain injury, with an applied case study of human umbilical-cord MSC
Article Snippet: The code required for this process is provided as supplementary data and is updated on a GitHub repository ( https://github.com/INSERM-U1141-Neurodiderot/premstem-scoring ).

Article Title: Clinical applications of and molecular insights from RNA sequencing in a rare disease cohort.
Article Snippet: Broad Institute, GitHub Repository. https:// broad insti tute. github. io/ picar d/.

Generated:

Article Title: A systematic scoring system to optimise the testing of neurotherapeutics in models of perinatal brain injury, with an applied case study of human umbilical-cord MSC
Article Snippet: .. The datasets analysed during the current study are available in the GSE298271, and the datasets generated during the current study are available in the GitHub repository, https://github.com/INSERM-U1141-Neurodiderot/premstem-scoring . .. The datasets analysed during the current study are available in the GSE298271, and the datasets generated during the current study are available in the GitHub repository, https://github.com/INSERM-U1141-Neurodiderot/premstem-scoring .

Construct:

Article Title: Metaxa: A Transformer-Based Deep Learning Model for Taxonomic Classification of Long Nanopore Reads
Article Snippet: .. The SRA accession lists used to construct the in-sample and out-of-sample datasets were originally compiled by the MetageNN authors [ ] and are available on their GitHub repository at https://github.com/CSB5/MetageNN/tree/d7c858cee1b88bf78fb1ea7d120b3be180a52b69 Public Zymo D6322 R9 Nanopore sequencing data were obtained from the UNCALLED study [ ], available under NCBI BioProject PRJNA604456. .. Newly sequenced Zymo D6322 R10 data are available under BioProject PRJNA1240873.

Nanopore Sequencing:

Article Title: Metaxa: A Transformer-Based Deep Learning Model for Taxonomic Classification of Long Nanopore Reads
Article Snippet: .. The SRA accession lists used to construct the in-sample and out-of-sample datasets were originally compiled by the MetageNN authors [ ] and are available on their GitHub repository at https://github.com/CSB5/MetageNN/tree/d7c858cee1b88bf78fb1ea7d120b3be180a52b69 Public Zymo D6322 R9 Nanopore sequencing data were obtained from the UNCALLED study [ ], available under NCBI BioProject PRJNA604456. .. Newly sequenced Zymo D6322 R10 data are available under BioProject PRJNA1240873.



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